Szil��rd P��ll – NVIDIA Technical Blog News and tutorials for developers, data scientists, and IT admins 2024-11-04T23:15:21Z http://www.open-lab.net/blog/feed/ Szil��rd P��ll <![CDATA[A Guide to CUDA Graphs in GROMACS 2023]]> http://www.open-lab.net/blog/?p=63250 2023-06-09T22:31:08Z 2023-04-14T18:10:14Z GPUs continue to get faster with each new generation, and it is often the case that each activity on the GPU (such as a kernel or memory copy) completes very...]]>

GPUs continue to get faster with each new generation, and it is often the case that each activity on the GPU (such as a kernel or memory copy) completes very quickly. In the past, each activity had to be separately scheduled (launched) by the CPU, and associated overheads could accumulate to become a performance bottleneck. The CUDA Graphs facility addresses this problem by enabling multiple GPU…

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Szil��rd P��ll <![CDATA[Massively Improved Multi-node NVIDIA GPU Scalability with GROMACS]]> http://www.open-lab.net/blog/?p=60772 2024-11-04T23:15:21Z 2023-02-09T17:00:00Z GROMACS, a scientific software package widely used for simulating biomolecular systems, plays a crucial role in comprehending important biological processes...]]>

GROMACS, a scientific software package widely used for simulating biomolecular systems, plays a crucial role in comprehending important biological processes important for disease prevention and treatment. GROMACS can use multiple GPUs in parallel to run each simulation as quickly as possible. Over the past several years, NVIDIA and the core GROMACS developers have collaborated on a series of…

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Szil��rd P��ll <![CDATA[Maximizing GROMACS Throughput with Multiple Simulations per GPU Using MPS and MIG]]> http://www.open-lab.net/blog/?p=37951 2022-08-21T23:52:43Z 2021-10-08T16:20:08Z GROMACS, a simulation package for biomolecular systems, is one of the most highly used scientific software applications worldwide, and a key tool in...]]>

GROMACS, a simulation package for biomolecular systems, is one of the most highly used scientific software applications worldwide, and a key tool in understanding important biological processes including those underlying the current COVID-19 pandemic. In a previous post, we showcased recent optimizations, performed in collaboration with the core development team, that enable GROMACS to…

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