BioNeMo – NVIDIA Technical Blog News and tutorials for developers, data scientists, and IT admins 2025-05-27T22:43:54Z http://www.open-lab.net/blog/feed/ Kyle Tretina <![CDATA[Understanding the Language of Life��s Biomolecules Across Evolution at a New Scale with Evo 2]]> http://www.open-lab.net/blog/?p=95589 2025-04-23T02:44:28Z 2025-02-19T17:14:51Z AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics...]]> AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics...A horizontal helix.

AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics datasets, and automated laboratory workflows has allowed scientists to tackle problems once thought intractable��from rapid protein structure prediction to generative drug design, increasing the need for AI literacy among scientists.

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Kyle Tretina <![CDATA[Evaluating GenMol as a Generalist Foundation Model for Molecular Generation]]> http://www.open-lab.net/blog/?p=94836 2025-01-23T19:54:29Z 2025-01-13T14:00:00Z Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization....]]> Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization....

Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization. Adapting these specialized models to new tasks requires substantial time, computational power, and expertise��challenges that grow when researchers simultaneously work across multiple targets or properties.

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Kyle Tretina <![CDATA[Accelerate Protein Engineering with the NVIDIA BioNeMo Blueprint for Generative Protein Binder Design]]> http://www.open-lab.net/blog/?p=94851 2025-01-23T19:54:28Z 2025-01-13T14:00:00Z Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking...]]> Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking...

Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking trial-and-error process��iterating through thousands of candidates, each synthesis and validation round taking months if not years. Considering the average human protein is 430 amino acids long, the number of possible designs translates to��

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Vega Shah <![CDATA[In-Silico Antibody Development with AlphaBind Using NVIDIA BioNeMo and AWS HealthOmics]]> http://www.open-lab.net/blog/?p=92757 2024-12-12T19:38:30Z 2024-12-03T18:00:00Z Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range...]]> Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range...Image shows a 3D molecular structure of a protein, most likely an antibody, visualized using a ribbon diagram, with the classic Y-shaped configuration characteristic of antibodies.

Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range of diseases, from cancer to autoimmune disorders. Their specificity reduces the likelihood of off-target effects, making them safer and often more effective than small-molecule drugs for complex conditions. As a result��

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Mario Geiger <![CDATA[Accelerate Drug and Material Discovery with New Math Library NVIDIA cuEquivariance]]> http://www.open-lab.net/blog/?p=91896 2024-11-18T22:58:58Z 2024-11-18T18:30:00Z AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of...]]> AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of...

AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of a new solid that can become the next battery material. These tasks require high precision and accuracy. What makes AI for science even more challenging is that highly accurate and precise scientific data is often scarce��

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Kyle Tretina <![CDATA[Boost Alphafold2 Protein Structure Prediction with GPU-Accelerated MMseqs2]]> http://www.open-lab.net/blog/?p=91623 2024-11-14T17:10:35Z 2024-11-13T17:00:00Z The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a...]]> The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a...A protein structure illustration.

The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a multiple sequence alignment (MSA), and the evolutionary information retrieved from these alignments can yield insights into protein structure, function, and evolutionary history. Now, with MMseqs2-GPU, an updated GPU-accelerated��

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Vega Shah <![CDATA[Spotlight: Montai Builds a Multimodal AI Platform for Drug Discovery Using NVIDIA NIM Microservices]]> http://www.open-lab.net/blog/?p=89334 2024-10-23T23:37:06Z 2024-09-26T16:00:00Z Drug discovery aims to develop new therapeutic agents that effectively target diseases while minimizing side effects for patients. Using multimodal data��such...]]> Drug discovery aims to develop new therapeutic agents that effectively target diseases while minimizing side effects for patients. Using multimodal data��such...

Drug discovery aims to develop new therapeutic agents that effectively target diseases while minimizing side effects for patients. Using multimodal data��such as molecular structures, cellular images, sequences, and unstructured data��can be highly valuable in identifying novel and safe drug candidates. Yet, creating multimodal AI models for computer-aided drug discovery is challenging.

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Kristen Rumley <![CDATA[NVIDIA Launches NIM Agent Blueprints for Generative AI]]> http://www.open-lab.net/blog/?p=87899 2024-11-04T22:52:07Z 2024-08-27T13:00:00Z Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.]]> Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.image of a digital human, drug discover and pdf workflow

Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.

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Kyle Tretina <![CDATA[Unlock Gene Networks Using Limited Data with AI Model Geneformer]]> http://www.open-lab.net/blog/?p=85400 2024-07-30T23:34:35Z 2024-07-15T12:00:00Z Geneformer is a recently introduced and powerful AI model that learns gene network dynamics and interactions using transfer learning from vast single-cell...]]> Geneformer is a recently introduced and powerful AI model that learns gene network dynamics and interactions using transfer learning from vast single-cell...

Geneformer is a recently introduced and powerful AI model that learns gene network dynamics and interactions using transfer learning from vast single-cell transcriptome data. This tool enables researchers to make accurate predictions about gene behavior and disease mechanisms even with limited data, accelerating drug target discovery and advancing understanding of complex genetic networks in��

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Tianna Nguy <![CDATA[NVIDIA GTC Training Labs On Demand Available Now]]> http://www.open-lab.net/blog/?p=82157 2024-05-07T17:47:17Z 2024-05-07T17:02:57Z Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.]]> Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.nearly 100 training labs from GTC available on demand

Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.

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Harry Clifford <![CDATA[Boost Multi-Omics Analysis with GPU-Acceleration and Generative AI]]> http://www.open-lab.net/blog/?p=79323 2024-05-07T19:36:37Z 2024-03-19T15:00:00Z NVIDIA Parabricks v4.3 was released at NVIDIA GTC 2024, introducing new tooling and workflows that bring acceleration and the latest AI techniques to multiple...]]> NVIDIA Parabricks v4.3 was released at NVIDIA GTC 2024, introducing new tooling and workflows that bring acceleration and the latest AI techniques to multiple...Decorative image of stained cells in light green on dark blue background.

NVIDIA Parabricks v4.3 was released at NVIDIA GTC 2024, introducing new tooling and workflows that bring acceleration and the latest AI techniques to multiple omics data types. In addition to analyzing DNA and RNA, you can now also analyze methylation, single-cell, and spatial omics workloads at high speed and high accuracy with the power of GPUs and generative AI. Parabricks v4.3��

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Amanda Saunders <![CDATA[NVIDIA NIM Offers Optimized Inference Microservices for Deploying AI Models at Scale]]> http://www.open-lab.net/blog/?p=79467 2024-06-03T15:44:17Z 2024-03-18T22:00:00Z The rise in generative AI adoption has been remarkable. Catalyzed by the launch of OpenAI��s ChatGPT in 2022, the new technology amassed over 100M users within...]]> The rise in generative AI adoption has been remarkable. Catalyzed by the launch of OpenAI��s ChatGPT in 2022, the new technology amassed over 100M users within...An illustration representing NVIDIA NIM.

The rise in generative AI adoption has been remarkable. Catalyzed by the launch of OpenAI��s ChatGPT in 2022, the new technology amassed over 100M users within months and drove a surge of development activities across almost every industry. By 2023, developers began POCs using APIs and open-source community models from Meta, Mistral, Stability, and more. Entering 2024��

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Feiwen Zhu <![CDATA[Optimizing OpenFold Training for Drug Discovery]]> http://www.open-lab.net/blog/?p=78346 2024-03-07T19:18:52Z 2024-02-28T19:29:02Z Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep...]]> Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep...Decorative image of colorful protein structures.

Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep learning�Cbased computational methods have been emerging and have shown promising results. Among these lines of work, AlphaFold2 is the first method that has achieved results comparable to slower physics-based computational methods.

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Alan Nafiiev <![CDATA[Accelerating Drug Discovery at Receptor.AI with NVIDIA BioNeMo Cloud APIs]]> http://www.open-lab.net/blog/?p=77569 2024-05-08T17:57:29Z 2024-02-14T21:00:00Z The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally...]]> The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally...

The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally long and expensive process has been radically improved by AI techniques like deep learning, empowered by the rise of accelerated computing. Receptor.AI, a London-based drug discovery company and NVIDIA Inception member��

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Abraham Stern <![CDATA[New Models MolMIM and DiffDock Power Molecule Generation and Molecular Docking in NVIDIA BioNeMo]]> http://www.open-lab.net/blog/?p=75967 2024-01-25T18:17:38Z 2024-01-08T19:00:00Z The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine.  Mathematically, the odds of...]]> The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine.  Mathematically, the odds of...Decorative image of molecular displays.

The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine. Mathematically, the odds of randomly stumbling across a good therapeutic candidate are staggeringly small. This is owed primarily to the astronomically large number of ways that just a handful of atoms can be connected together to make what appear at first glance to be��

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Bruno Trentini <![CDATA[Breakthrough in Functional Annotation with HiFi-NN]]> http://www.open-lab.net/blog/?p=75395 2024-09-17T17:12:14Z 2023-12-19T19:00:00Z Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial...]]> Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial...A triptych of digital graphics showcasing biomolecular structures resembling biomes, DNA, cells, and data points.

Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial intelligence for enzyme generation is an exciting field of research with direct applications in the life sciences. Advances in these scientific challenges are a critical necessity to further advance drug discovery, environmental science��

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Harry Clifford <![CDATA[Train Generative AI Models for Drug Discovery with NVIDIA BioNeMo Framework]]> http://www.open-lab.net/blog/?p=74507 2023-12-14T19:27:34Z 2023-11-29T19:11:15Z NVIDIA BioNeMo Framework has been released and is now generally available to download on NGC, enabling researchers to build and deploy generative AI, large...]]> NVIDIA BioNeMo Framework has been released and is now generally available to download on NGC, enabling researchers to build and deploy generative AI, large...GIF of rotating protein structure.

NVIDIA BioNeMo Framework has been released and is now generally available to download on NGC, enabling researchers to build and deploy generative AI, large language models (LLMs), and foundation models in drug discovery applications. The BioNeMo platform includes managed services, API endpoints, and training frameworks to simplify, accelerate, and scale generative AI for drug discovery.

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Annamalai Chockalingam <![CDATA[NVIDIA Announces Generative AI Services for Language, Visual Content, and Biology Applications]]> http://www.open-lab.net/blog/?p=62329 2024-02-15T19:14:48Z 2023-03-22T16:00:00Z Generative AI is primed to transform the world��s industries and to solve today��s most important challenges. To enable enterprises to take advantage of the...]]> Generative AI is primed to transform the world��s industries and to solve today��s most important challenges. To enable enterprises to take advantage of the...Sunset, molecule, and avatar composite.

Generative AI is primed to transform the world��s industries and to solve today��s most important challenges. To enable enterprises to take advantage of the possibilities with generative AI, NVIDIA has launched NVIDIA AI Foundations and the NVIDIA NeMo framework, powered by NVIDIA DGX Cloud. NVIDIA AI Foundations are a family of cloud services that provide enterprises with a simplified��

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Vanessa Braunstein <![CDATA[Build Generative AI Pipelines for Drug Discovery with NVIDIA BioNeMo Service]]> http://www.open-lab.net/blog/?p=61944 2023-06-09T22:35:27Z 2023-03-21T15:50:00Z Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs)...]]> Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs)...

Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs) that understand biology and chemistry text are helping scientists understand proteins, small molecules, DNA, and biomedical text. These state-of-the-art AI models help generate de novo proteins and molecules and predict the 3D��

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Vanessa Braunstein <![CDATA[Predict Protein Structures and Properties with Biomolecular Large Language Models]]> http://www.open-lab.net/blog/?p=58461 2023-06-12T08:22:17Z 2022-12-08T23:29:40Z The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training...]]> The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training...Biomolecular structure

The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training and serving biomolecular large language models (LLMs) for chemistry and biology at supercomputing scale across billions of parameters. The BioNeMo service is domain-optimized for chemical, proteomic, and genomic applications��

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Chintan Patel <![CDATA[New on NGC: SDKs for Large Language Models, Digital Twins, Digital Biology, and More]]> http://www.open-lab.net/blog/?p=56711 2023-07-31T19:31:36Z 2022-11-03T19:00:00Z New SDKs are available in the NGC catalog, a hub of GPU-optimized deep learning, machine learning, and HPC applications. With highly performant software...]]> New SDKs are available in the NGC catalog, a hub of GPU-optimized deep learning, machine learning, and HPC applications. With highly performant software...

New SDKs are available in the NGC catalog, a hub of GPU-optimized deep learning, machine learning, and HPC applications. With highly performant software containers, pretrained models, industry-specific SDKs, and Jupyter notebooks available, AI developers and data scientists can simplify and reduce complexities in their end-to-end workflows. This post provides an overview of new and updated��

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Bruno Trentini <![CDATA[Latest Discoveries at the Healthcare & Life Sciences Developer Summit]]> http://www.open-lab.net/blog/?p=56563 2023-06-12T08:38:08Z 2022-10-31T22:13:00Z Humanity has seen major scientific breakthroughs directly related to discoveries that do not share the glamor of the breakthrough they enabled. Sir Alexander...]]> Humanity has seen major scientific breakthroughs directly related to discoveries that do not share the glamor of the breakthrough they enabled. Sir Alexander...

Humanity has seen major scientific breakthroughs directly related to discoveries that do not share the glamor of the breakthrough they enabled. Sir Alexander Fleming��s penicillin gave rise to effective treatments for infections like pneumonia, but penicillin��s importance outshines a technology known as the Petri dish, invented by a German physician. It was in a Petri dish that penicillin was��

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Erik Pounds <![CDATA[New Languages, Enhanced Cybersecurity, and Medical AI Frameworks Unveiled at GTC]]> http://www.open-lab.net/blog/?p=54868 2023-05-23T23:52:54Z 2022-09-21T15:18:00Z At GTC 2022, NVIDIA introduced enhancements to AI frameworks for building real-time speech AI applications, designing high-performing recommenders at scale,...]]> At GTC 2022, NVIDIA introduced enhancements to AI frameworks for building real-time speech AI applications, designing high-performing recommenders at scale,...

At GTC 2022, NVIDIA introduced enhancements to AI frameworks for building real-time speech AI applications, designing high-performing recommenders at scale, applying AI to cybersecurity challenges, creating AI-powered medical devices, and more. Showcased real-world, end-to-end AI frameworks highlighted the customers and partners leading the way in their industries and domains.

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Annamalai Chockalingam <![CDATA[Simplifying Access to Large Language Models with the NVIDIA NeMo Framework and Services]]> http://www.open-lab.net/blog/?p=55008 2023-06-12T08:54:07Z 2022-09-21T15:15:00Z Recent advances in large language models (LLMs) have fueled state-of-the-art performance for NLP applications such as virtual scribes in healthcare, interactive...]]> Recent advances in large language models (LLMs) have fueled state-of-the-art performance for NLP applications such as virtual scribes in healthcare, interactive...

Recent advances in large language models (LLMs) have fueled state-of-the-art performance for NLP applications such as virtual scribes in healthcare, interactive virtual assistants, and many more. To simplify access to LLMs, NVIDIA has announced two services: NeMo LLM for customizing and using LLMs, and BioNeMo, which expands scientific applications of LLMs for the pharmaceutical and��

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